Function reference • SWMPr

All functions

aggremetab(): Aggregate metabolism data

aggreswmp(): Aggregate swmpr data

all_params(): Import current station records from the CDMO

all_params_dtrng(): Get CDMO records within a date range

apacpnut: Example nutrient data for Apalachicola Bay Cat Point station.

apacpwq: Example water quality data for Apalachicola Bay Cat Point station.

apadbwq: Example water quality data for Apalachicola Bay Dry Bar station.

apaebmet: Example weather data for Apalachicola Bay East Bay station.

calckl(): Calculate oxygen mass transfer coefficient

cens_id(): Flag observations above/below detection limits

comb(): Combine swmpr data

decomp(): Simple trend decomposition

decompTs(): Decompose a time series

decomp_cj(): Simple trend decomposition of monthly swmpr data

ecometab(): Ecosystem metabolism

gradcols(): Get colors for plots

hist(<swmpr>): Plot swmpr using a histogram

import_local(): Import local CDMO data

map_reserve(): Map a reserve

metab_day(): Identify metabolic days in a time series

na.approx(<swmpr>): Linearly interpolate gaps

overplot(): Plot multiple SWMP time series on the same y-axis

oxySol(): Dissolved oxygen at saturation

param_names(): Get parameters of a given type

parser(): Parse web results for swmpr

plot(<swmpr>) lines(<swmpr>): Plot swmpr data

plot_metab(): Plot ecosystem metabolism for a swmpr object

plot_quants(): Create a plot of data for a single year overlaid on historical data.

plot_summary(): Plot graphical summaries of SWMP data

plot_wind(): Create a wind rose

qaqc(): QAQC filtering for SWMP data

qaqcchk(): Summary of QAQC flags in SWMP data

rem_reps(): Remove replicates in nutrient data

setstep(): Format a swmpr time vector

single_param(): Get CDMO records for a single parameter

site_codes(): Obtain metadata for all stations

site_codes_ind(): Obtain metadata for a single reserve

smoother(): Smooth swmpr data

stat_locs: Locations of NERRS sites

subset(<swmpr>): Subset a swmpr object

swmpr(): Create a swmpr object

time_vec(): Format SWMP datetimestamp