All functions

aggremetab()

Aggregate metabolism data

aggreswmp()

Aggregate swmpr data

all_params()

Import current station records from the CDMO

all_params_dtrng()

Get CDMO records within a date range

apacpnut

Example nutrient data for Apalachicola Bay Cat Point station.

apacpwq

Example water quality data for Apalachicola Bay Cat Point station.

apadbwq

Example water quality data for Apalachicola Bay Dry Bar station.

apaebmet

Example weather data for Apalachicola Bay East Bay station.

calckl()

Calculate oxygen mass transfer coefficient

cens_id()

Flag observations above/below detection limits

comb()

Combine swmpr data

decomp()

Simple trend decomposition

decompTs()

Decompose a time series

decomp_cj()

Simple trend decomposition of monthly swmpr data

ecometab()

Ecosystem metabolism

gradcols()

Get colors for plots

hist(<swmpr>)

Plot swmpr using a histogram

import_local()

Import local CDMO data

map_reserve()

Map a reserve

metab_day()

Identify metabolic days in a time series

na.approx(<swmpr>)

Linearly interpolate gaps

overplot()

Plot multiple SWMP time series on the same y-axis

oxySol()

Dissolved oxygen at saturation

param_names()

Get parameters of a given type

parser()

Parse web results for swmpr

plot(<swmpr>) lines(<swmpr>)

Plot swmpr data

plot_metab()

Plot ecosystem metabolism for a swmpr object

plot_quants()

Create a plot of data for a single year overlaid on historical data.

plot_summary()

Plot graphical summaries of SWMP data

plot_wind()

Create a wind rose

qaqc()

QAQC filtering for SWMP data

qaqcchk()

Summary of QAQC flags in SWMP data

rem_reps()

Remove replicates in nutrient data

setstep()

Format a swmpr time vector

single_param()

Get CDMO records for a single parameter

site_codes()

Obtain metadata for all stations

site_codes_ind()

Obtain metadata for a single reserve

smoother()

Smooth swmpr data

stat_locs

Locations of NERRS sites

subset(<swmpr>)

Subset a swmpr object

swmpr()

Create a swmpr object

time_vec()

Format SWMP datetimestamp